A Master's Journey
I am privileged to have had the opportunity to travel to Boston for 2 weeks during Summer 2024 to attend my in-person lab requirements. Prior to this trip, I had never been on the East Coast, and this was such a wonderful experience in exploring my home campus and bonding with my peers, whom I had only worked with virtually thus far.
In class, we were introduced to many important isolation methods and techniques for analysis, including gel electrophoresis, PCR, Elisa, Western Blot, HIC Column Chromatography, HPLC, BCA assay, restriction digest, and DNA/protein extractions. We had the opportunity to establish our own prokaryotic and eukaryotic cell cultures. We performed transformation on our E. coli cells, and transfection with our HEK297T cells to introduce foreign DNA tagged with a GFP marker for identification. We performed serial dilutions and stainings with Coomassie and Ponceau, learned how to interpret a chromatogram, we annotated vectors, and identified appropriate primers.
We also learned how to read a UV-Visible light absorption spectrum obtained by means of measuring optical density to determine DNA and protein concentrations.
The Ferris Wheel at Encore Casino
Inside Encore: Sports lounge
(The Celtics Won that year!)
The Casino Floor From Above
My Car Outside in Valet 😉
pGlo-Transfected HEK293t Cultures!
At First, We Weren't Seeing Anything...
Check Out the Glow!!!
We Were So Proud of Our Little Cells!!!
This was the pride of our research- we spent two weeks culturing HEK293t cells, which are an immortalized human embryonic kidney cell line. I had not idea how tedious it was to culture eukaryotic cells. We had to check on them twice a day and change media frequently. There were a few times we weren't sure if our line was going to make it! We measured pH, CO2 uptake, Temperature, nutrient concentrations, lactic acid... and this was a highly simplified experiment- I can only imagine the challenges scientists encounter in the field! We generated pGlo in E. coli cultures, then isolated the plasmids containing the fluorescent marker with HIC Columns. Two days before these images were taken, we introduced the pGlo plasmids to our eukaryotic cells by means of transient transfection. In transient transfection, there is no incorporation of the foreign genetic material from the plasmids into the host cell genome, so over time as the cells continue to divide and the transfected cells die off, the glow dims. We were the only group in the lab whose cells were successfully transfected!!!
This Was Our Cleanest Electrophoresis Run
The Next Three Images Demonstrate the Difference Lighting Can Make in What is Visible!
These Were Taken With Different Plates in the Machine!
This Was Natural Light
Our HIC Column Containing Our pGlo Plasmid Isolate!!!
The Flow Through Fraction- Still Containing Plasmids Glowing Bright Under UV!
pGlo is Highly Hydrophobic, Which is Why the HIC Column is an Excellent Choice for Isolating
We Were Successful in Isolating the Majority of Our Plasmids
UV Spectrophotometry
Now This is a Clean DNA Sample!!!
DNA and RNA Peak at 260nm, While Protein Peak Absorbance is 260nm
Our Western Blot After Coumassie Blue Staining
Our E. coli plates hard at work producing the pGlo plasmids! (along with controls)
Confirmation with UV that the plasmids were taken in by
E. coli
Serial Dilutions & BCA Assay
One of the Culture Samples Began Growing a Fungus- Contamination is REAL!!!
The View from Where I Was Studying Inside Our Building
Amaryllis on My Path
Some of the Housing Right By My Building
The Campus was Lined in Cherry Blossums
Taking Notes!
The Church Across the Street from My Building